rps16 protein (Phaeodactylum tricornutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rps16

30S ribosomal protein S16, chloroplastic. (78 aa)

Predicted Functional Partners:

rpl31

0.990

rps2

0.987

rps14

0.985

rps18

0.985

rps12

0.985

rps20

0.984

rpl36

0.984

B7FPS3_PHATC

0.983

B7FWF8_PHATC

0.980

B7FY86_PHATC

0.980

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7FPS3_PHATC	B7FWF8_PHATC	B7FPS3	B7FWF8	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	Predicted protein.	0.998
B7FPS3_PHATC	B7FY86_PHATC	B7FPS3	B7FY86	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	Predicted protein.	0.986
B7FPS3_PHATC	rpl31	B7FPS3	A0T0K3	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	50S ribosomal protein L31, chloroplastic; Binds the 23S rRNA.	0.794
B7FPS3_PHATC	rpl36	B7FPS3	A0T0J7	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	50S ribosomal protein L36, chloroplastic.	0.998
B7FPS3_PHATC	rps12	B7FPS3	A0T0K4	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).	0.999
B7FPS3_PHATC	rps14	B7FPS3	A0T0B3	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.	0.999
B7FPS3_PHATC	rps16	B7FPS3	Q5D704	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	30S ribosomal protein S16, chloroplastic.	0.983
B7FPS3_PHATC	rps18	B7FPS3	A0T0D4	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family.	0.999
B7FPS3_PHATC	rps2	B7FPS3	A0T0E0	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	30S ribosomal protein S2, chloroplastic.	0.999
B7FPS3_PHATC	rps20	B7FPS3	A0T0D6	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	30S ribosomal protein S20, chloroplastic; Binds directly to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS20 family.	0.848
B7FWF8_PHATC	B7FPS3_PHATC	B7FWF8	B7FPS3	Predicted protein.	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	0.998
B7FWF8_PHATC	B7FY86_PHATC	B7FWF8	B7FY86	Predicted protein.	Predicted protein.	0.999
B7FWF8_PHATC	rpl31	B7FWF8	A0T0K3	Predicted protein.	50S ribosomal protein L31, chloroplastic; Binds the 23S rRNA.	0.999
B7FWF8_PHATC	rpl36	B7FWF8	A0T0J7	Predicted protein.	50S ribosomal protein L36, chloroplastic.	0.999
B7FWF8_PHATC	rps12	B7FWF8	A0T0K4	Predicted protein.	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).	0.999
B7FWF8_PHATC	rps14	B7FWF8	A0T0B3	Predicted protein.	30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.	0.998
B7FWF8_PHATC	rps16	B7FWF8	Q5D704	Predicted protein.	30S ribosomal protein S16, chloroplastic.	0.980
B7FWF8_PHATC	rps18	B7FWF8	A0T0D4	Predicted protein.	30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family.	0.997
B7FWF8_PHATC	rps2	B7FWF8	A0T0E0	Predicted protein.	30S ribosomal protein S2, chloroplastic.	0.999
B7FWF8_PHATC	rps20	B7FWF8	A0T0D6	Predicted protein.	30S ribosomal protein S20, chloroplastic; Binds directly to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS20 family.	0.999