STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG28443.1Nucleotide-binding universal stress protein, UspA family. (165 aa)    
Predicted Functional Partners:
SDG60361.1
DamX protein.
  
    0.716
SDH43126.1
Protein of unknown function.
  
     0.703
SDH61801.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
  
  0.661
SDG28358.1
Thioredoxin.
 
    0.632
SDG28388.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
 
   
 0.632
SDH76467.1
Protein of unknown function.
  
     0.630
SDG28335.1
PilZ domain-containing protein.
 
     0.599
SDG57572.1
HDOD domain-containing protein.
  
     0.596
SDG79716.1
PilZ domain-containing protein.
  
    0.591
SDH18658.1
Hypothetical protein.
   
    0.583
Your Current Organism:
Pseudomonas benzenivorans
NCBI taxonomy Id: 556533
Other names: CIP 109857, DSM 8628, P. benzenivorans, Pseudomonas benzenivorans Lang et al. 2012 emend. Hameed et al. 2014, Pseudomonas sp. DSM 8628
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