STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG71980.1Signal transduction histidine kinase. (410 aa)    
Predicted Functional Partners:
SDH85493.1
Hypothetical protein.
 
 
 0.993
SDI21241.1
PAS domain S-box-containing protein.
 
0.983
SDG71957.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 0.978
SDG55766.1
Signal transduction histidine kinase.
  
 0.977
SDG25940.1
Two-component system, cell cycle response regulator DivK.
 
 0.970
SDG26808.1
PAS domain S-box-containing protein.
 
 
 0.970
SDG37614.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.946
SDI21178.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.928
SDG69698.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
0.923
SDG36203.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 0.891
Your Current Organism:
Pseudomonas benzenivorans
NCBI taxonomy Id: 556533
Other names: CIP 109857, DSM 8628, P. benzenivorans, Pseudomonas benzenivorans Lang et al. 2012 emend. Hameed et al. 2014, Pseudomonas sp. DSM 8628
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