STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG73383.1Type IVB pilus formation outer membrane protein, R64 PilN family. (577 aa)    
Predicted Functional Partners:
SDG73247.1
Type II secretory pathway, component PulF.
 
  
 0.958
SDG73171.1
Type II secretory pathway, pseudopilin PulG.
 
  
 0.931
SDG71543.1
Type IV pilus biogenesis.
  
 
 0.904
SDG76801.1
General secretion pathway protein C.
  
 
 0.904
SDG73306.1
Type II/IV secretion system protein.
 
  
 0.832
SDG73352.1
Pilin accessory protein (PilO).
     
 0.804
SDG73273.1
Hypothetical protein.
  
  
 0.800
SDG73334.1
Type IV pilus biogenesis protein PilP.
       0.795
SDG73400.1
Type IV pili sensor histidine kinase and response regulator.
       0.795
SDG73196.1
Twitching motility protein PilT.
 
     0.770
Your Current Organism:
Pseudomonas benzenivorans
NCBI taxonomy Id: 556533
Other names: CIP 109857, DSM 8628, P. benzenivorans, Pseudomonas benzenivorans Lang et al. 2012 emend. Hameed et al. 2014, Pseudomonas sp. DSM 8628
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