STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI12474.1Putative protease. (331 aa)    
Predicted Functional Partners:
SDI12443.1
Collagenase-like protease, PrtC family.
 
 
 0.990
SDI12418.1
Predicted lipid carrier protein YhbT, contains SCP2 domain.
 
  
 0.977
SDG41026.1
NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator.
  
    0.646
SDG76354.1
Predicted O-methyltransferase YrrM.
  
  
 0.628
SDI12357.1
Uncharacterized protein, contains metal-binding DGC domain.
 
    0.616
SDG40883.1
Copper chaperone NosL.
  
    0.609
SDI12552.1
Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.555
SDG40971.1
Nitrous oxidase accessory protein.
 
    0.544
nosZ
Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
  
    0.526
SDG40914.1
Cu-processing system permease protein.
  
    0.511
Your Current Organism:
Pseudomonas benzenivorans
NCBI taxonomy Id: 556533
Other names: CIP 109857, DSM 8628, P. benzenivorans, Pseudomonas benzenivorans Lang et al. 2012 emend. Hameed et al. 2014, Pseudomonas sp. DSM 8628
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