STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_00354Zinc finger protein ubi-d4. (184 aa)    
Predicted Functional Partners:
N303_00625
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1.
   
 0.950
N303_09709
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.
   
 0.948
N303_00658
AT-rich interactive domain-containing protein 1B.
    
 0.938
N303_07562
Putative global transcription activator SNF2L2.
    
 0.933
N303_13472
SWI/SNF complex subunit SMARCC1.
    
 0.931
N303_01039
AT-rich interactive domain-containing protein 2.
    
 0.928
N303_08654
Protein polybromo-1.
    
 0.927
N303_10320
Actin-like 6A; Belongs to the actin family.
   
 0.921
N303_10413
Bromodomain-containing protein 7.
    
 0.913
N303_00583
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2.
   
 0.904
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.