STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_14718Deubiquitinating protein VCIP135. (1155 aa)    
Predicted Functional Partners:
N303_11972
NSFL1 cofactor p47.
    
 
 0.972
N303_02138
Ubiquitin fusion degradation protein 1.
    
 
 0.965
N303_03916
UBX domain-containing protein 2B.
    
 
 0.959
N303_11065
UBX domain-containing protein 7.
   
 
 0.954
N303_03479
UBX domain-containing protein 2A.
    
 
 0.950
N303_04265
Spermatogenesis-associated protein 5.
    
 
 0.906
N303_08557
Nuclear protein localization protein 4.
    
 
 0.771
N303_08556
Fanconi anemia-associated protein of 100 kDa.
    
 
 0.771
N303_12229
TNFAIP3-interacting protein 3.
    
 0.752
N303_11545
Ubiquitin-40S ribosomal protein S27a.
   
  0.672
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.