STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_06886Coiled-coil domain-containing protein 80. (956 aa)    
Predicted Functional Partners:
N303_00350
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.905
N303_14687
Extracellular matrix protein FRAS1.
    
 0.790
N303_06094
Nucleoporin GLE1.
    
 0.656
N303_12202
Histone chaperone ASF1.
    
 0.639
N303_13669
40S ribosomal protein S28.
   
   0.604
N303_14035
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.600
N303_15284
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.599
N303_09552
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
 
 0.582
N303_15709
Ribosomal_S7 domain-containing protein.
   
   0.572
N303_11050
Sushi, nidogen and EGF-like domain-containing protein 1.
    
 0.566
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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