STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_13182Putative ATP-dependent RNA helicase DDX27; Belongs to the DEAD box helicase family. (658 aa)    
Predicted Functional Partners:
N303_09303
Pescadillo.
   
 0.994
N303_04161
Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.986
N303_11007
p2Y purinoceptor 1; Belongs to the G-protein coupled receptor 1 family.
   
   0.984
N303_12780
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
 
 0.982
N303_11714
Ribosome biogenesis protein bop1.
   
 0.982
N303_06498
U3 small nucleolar RNA-associated protein 14 A.
   
 0.982
N303_00584
Pre-rRNA processing protein FTSJ3.
  
 0.975
N303_05199
Nucleolar complex protein 2.
   
 
 0.974
N303_00300
Putative rRNA-processing protein EBP2.
   
 0.974
N303_15667
U3 small nucleolar RNA-associated protein 18.
   
 0.972
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.