STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_09307RING finger protein 215. (210 aa)    
Predicted Functional Partners:
N303_15335
Ubiquitin-60S ribosomal protein L40.
    
 0.787
N303_11545
Ubiquitin-40S ribosomal protein S27a.
    
 0.763
N303_02186
Polyubiquitin-C.
    
 0.733
N303_07004
R-spondin-2.
    
 0.694
N303_11967
R-spondin-4.
    
 0.684
N303_10753
R-spondin-1.
    
  0.671
N303_04474
Leucine-rich repeat-containing G-protein coupled receptor 5.
    
 0.648
N303_00937
Leucine-rich repeat-containing G-protein coupled receptor 4.
    
 0.648
N303_08391
Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.626
N303_00350
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.606
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.