N303_07422 protein (Cuculus canorus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N303_07422

Coagulation factor VII; Belongs to the peptidase S1 family. (213 aa)

Predicted Functional Partners:

N303_09264

0.851

N303_02580

0.830

N303_15142

0.825

N303_08158

0.821

N303_13304

0.806

N303_08951

0.769

N303_15450

0.758

N303_12090

0.686

N303_10089

0.667

N303_11923

0.630

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_02580	N303_07422	A0A091G5Q6	A0A091FWH6	Mannan-binding lectin serine protease 2.	Coagulation factor VII; Belongs to the peptidase S1 family.	0.830
N303_02580	N303_08951	A0A091G5Q6	A0A091GDH7	Mannan-binding lectin serine protease 2.	Hepatocyte growth factor receptor.	0.769
N303_02580	N303_11923	A0A091G5Q6	A0A091GTL5	Mannan-binding lectin serine protease 2.	Eppin.	0.630
N303_02580	N303_13304	A0A091G5Q6	A0A091G6U9	Mannan-binding lectin serine protease 2.	Tissue factor.	0.523
N303_02580	N303_15142	A0A091G5Q6	A0A091FQP4	Mannan-binding lectin serine protease 2.	Coagulation factor VIII; Belongs to the multicopper oxidase family.	0.524
N303_02580	N303_15450	A0A091G5Q6	A0A091G3Q9	Mannan-binding lectin serine protease 2.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.758
N303_07422	N303_02580	A0A091FWH6	A0A091G5Q6	Coagulation factor VII; Belongs to the peptidase S1 family.	Mannan-binding lectin serine protease 2.	0.830
N303_07422	N303_08158	A0A091FWH6	A0A091GNY2	Coagulation factor VII; Belongs to the peptidase S1 family.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.821
N303_07422	N303_08951	A0A091FWH6	A0A091GDH7	Coagulation factor VII; Belongs to the peptidase S1 family.	Hepatocyte growth factor receptor.	0.769
N303_07422	N303_09264	A0A091FWH6	A0A091GA42	Coagulation factor VII; Belongs to the peptidase S1 family.	Neurotrypsin.	0.851
N303_07422	N303_10089	A0A091FWH6	A0A091FRJ0	Coagulation factor VII; Belongs to the peptidase S1 family.	Enteropeptidase.	0.667
N303_07422	N303_11923	A0A091FWH6	A0A091GTL5	Coagulation factor VII; Belongs to the peptidase S1 family.	Eppin.	0.630
N303_07422	N303_12090	A0A091FWH6	A0A091GND5	Coagulation factor VII; Belongs to the peptidase S1 family.	Scavenger receptor cysteine-rich domain-containing group B protein.	0.686
N303_07422	N303_13304	A0A091FWH6	A0A091G6U9	Coagulation factor VII; Belongs to the peptidase S1 family.	Tissue factor.	0.806
N303_07422	N303_15142	A0A091FWH6	A0A091FQP4	Coagulation factor VII; Belongs to the peptidase S1 family.	Coagulation factor VIII; Belongs to the multicopper oxidase family.	0.825
N303_07422	N303_15450	A0A091FWH6	A0A091G3Q9	Coagulation factor VII; Belongs to the peptidase S1 family.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.758
N303_08158	N303_07422	A0A091GNY2	A0A091FWH6	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Coagulation factor VII; Belongs to the peptidase S1 family.	0.821
N303_08158	N303_08951	A0A091GNY2	A0A091GDH7	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Hepatocyte growth factor receptor.	0.777
N303_08158	N303_11923	A0A091GNY2	A0A091GTL5	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Eppin.	0.630
N303_08158	N303_13304	A0A091GNY2	A0A091G6U9	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Tissue factor.	0.777