STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_12342Iroquois-class homeodomain protein IRX-4. (67 aa)    
Predicted Functional Partners:
N303_07920
Pre-B-cell leukemia transcription factor 1.
    
0.637
N303_12896
Pre-B-cell leukemia transcription factor 3.
    
0.637
N303_06257
Pre-B-cell leukemia transcription factor 3.
    
0.637
N303_09161
Hematopoietically-expressed homeobox protein HHEX.
    
 
 0.569
N303_15451
MADS-box domain-containing protein.
   
 
 0.565
N303_05015
Teashirt 1.
    
 0.528
N303_02907
Teashirt 2.
    
 0.519
N303_07415
Teashirt 3.
    
 0.519
N303_02476
Iroquois-class homeodomain protein IRX-1.
  
 
0.428
N303_04012
AT-rich interactive domain-containing protein 4A.
    
 
 0.416
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.