STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_14565E3 ubiquitin-protein ligase TRIM41. (170 aa)    
Predicted Functional Partners:
N303_02186
Polyubiquitin-C.
    
 0.700
N303_11545
Ubiquitin-40S ribosomal protein S27a.
    
  0.690
N303_08465
Inducible T-cell costimulator.
   
 0.683
N303_03083
Putative ATP-dependent RNA helicase DDX41.
    
 0.583
N303_15335
Ubiquitin-60S ribosomal protein L40.
    
  0.567
N303_07174
Interferon-induced helicase C domain-containing protein 1.
   
 0.562
N303_00599
Putative ATP-dependent RNA helicase DHX58.
   
 0.548
N303_06012
Protein argonaute-4; Belongs to the argonaute family.
    
 0.530
N303_06011
Protein argonaute-3.
    
 0.530
N303_00350
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.510
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.