STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_13879Zinc finger CCCH domain-containing protein 3. (331 aa)    
Predicted Functional Partners:
N303_05230
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 0.919
N303_06604
E3 ubiquitin-protein ligase RBBP6.
    
 0.919
N303_10498
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.917
N303_13880
Zinc finger CCCH domain-containing protein 3.
 
     0.917
N303_04910
Symplekin.
    
 0.915
N303_10744
Cleavage stimulation factor subunit 3.
    
 0.914
N303_15518
Poly(A) polymerase alpha.
    
 0.913
N303_02895
Cleavage stimulation factor subunit 1.
   
 0.910
N303_14911
Cleavage and polyadenylation specificity factor subunit 5.
    
 0.907
CLP1
Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]
    
 0.872
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.