STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_02060Calpain-5; Belongs to the peptidase C2 family. (641 aa)    
Predicted Functional Partners:
N303_04852
Calpastatin.
    
 0.743
N303_02463
Programmed cell death protein 6.
   
 0.635
N303_04194
Sorcin.
 
 
 0.635
N303_12697
Peflin.
   
 0.635
N303_03487
Intersectin-2.
   
 
  0.612
N303_01005
Leucine-rich repeat and guanylate kinase domain-containing protein.
    
 
 0.589
N303_12911
Caspase-1; Belongs to the peptidase C14A family.
   
 0.562
N303_13255
BH3-interacting domain death agonist.
    
  0.496
N303_09626
Sorbin and SH3 domain-containing protein 1.
    
   0.461
N303_01050
Sorbin and SH3 domain-containing protein 2.
    
   0.461
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.