N303_04159 protein (Cuculus canorus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N303_04159

MAM domain-containing protein. (143 aa)

Predicted Functional Partners:

N303_04157

0.899

N303_04158

0.899

N303_04156

0.899

N303_15450

0.708

N303_05181

0.568

N303_09374

0.568

N303_04474

0.515

N303_06692

0.515

N303_14231

0.515

N303_00937

0.515

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_00937	N303_04157	A0A091GDY9	A0A091FW67	Leucine-rich repeat-containing G-protein coupled receptor 4.	MAM and LDL-receptor class A domain-containing protein C10orf112.	0.515
N303_00937	N303_04158	A0A091GDY9	A0A091G040	Leucine-rich repeat-containing G-protein coupled receptor 4.	MAM and LDL-receptor class A domain-containing protein C10orf112.	0.515
N303_00937	N303_04159	A0A091GDY9	A0A091GL41	Leucine-rich repeat-containing G-protein coupled receptor 4.	MAM domain-containing protein.	0.515
N303_00937	N303_04474	A0A091GDY9	A0A091FMF8	Leucine-rich repeat-containing G-protein coupled receptor 4.	Leucine-rich repeat-containing G-protein coupled receptor 5.	0.862
N303_00937	N303_05181	A0A091GDY9	A0A091FP55	Leucine-rich repeat-containing G-protein coupled receptor 4.	Hyaluronan-binding protein 2.	0.467
N303_00937	N303_06692	A0A091GDY9	A0A091FSR4	Leucine-rich repeat-containing G-protein coupled receptor 4.	Relaxin receptor 1.	0.580
N303_00937	N303_09374	A0A091GDY9	A0A091GC67	Leucine-rich repeat-containing G-protein coupled receptor 4.	Hepatocyte growth factor activator.	0.467
N303_00937	N303_14231	A0A091GDY9	A0A091FXK5	Leucine-rich repeat-containing G-protein coupled receptor 4.	Relaxin receptor 1.	0.558
N303_00937	N303_15450	A0A091GDY9	A0A091G3Q9	Leucine-rich repeat-containing G-protein coupled receptor 4.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.903
N303_04156	N303_04157	A0A091G0Q4	A0A091FW67	MAM and LDL-receptor class A domain-containing protein C10orf112.	MAM and LDL-receptor class A domain-containing protein C10orf112.	0.899
N303_04156	N303_04158	A0A091G0Q4	A0A091G040	MAM and LDL-receptor class A domain-containing protein C10orf112.	MAM and LDL-receptor class A domain-containing protein C10orf112.	0.899
N303_04156	N303_04159	A0A091G0Q4	A0A091GL41	MAM and LDL-receptor class A domain-containing protein C10orf112.	MAM domain-containing protein.	0.899
N303_04157	N303_00937	A0A091FW67	A0A091GDY9	MAM and LDL-receptor class A domain-containing protein C10orf112.	Leucine-rich repeat-containing G-protein coupled receptor 4.	0.515
N303_04157	N303_04156	A0A091FW67	A0A091G0Q4	MAM and LDL-receptor class A domain-containing protein C10orf112.	MAM and LDL-receptor class A domain-containing protein C10orf112.	0.899
N303_04157	N303_04158	A0A091FW67	A0A091G040	MAM and LDL-receptor class A domain-containing protein C10orf112.	MAM and LDL-receptor class A domain-containing protein C10orf112.	0.928
N303_04157	N303_04159	A0A091FW67	A0A091GL41	MAM and LDL-receptor class A domain-containing protein C10orf112.	MAM domain-containing protein.	0.899
N303_04157	N303_04474	A0A091FW67	A0A091FMF8	MAM and LDL-receptor class A domain-containing protein C10orf112.	Leucine-rich repeat-containing G-protein coupled receptor 5.	0.515
N303_04157	N303_05181	A0A091FW67	A0A091FP55	MAM and LDL-receptor class A domain-containing protein C10orf112.	Hyaluronan-binding protein 2.	0.568
N303_04157	N303_06692	A0A091FW67	A0A091FSR4	MAM and LDL-receptor class A domain-containing protein C10orf112.	Relaxin receptor 1.	0.515
N303_04157	N303_09374	A0A091FW67	A0A091GC67	MAM and LDL-receptor class A domain-containing protein C10orf112.	Hepatocyte growth factor activator.	0.568