N303_05565 protein (Cuculus canorus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N303_05565

Ras-related protein Rab-19. (194 aa)

Predicted Functional Partners:

N303_00993

0.868

N303_02936

0.865

N303_10867

0.860

N303_01802

0.853

N303_03020

0.853

N303_05495

0.851

N303_05832

0.832

N303_02323

0.815

N303_06007

0.815

N303_11961

0.797

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_00993	N303_01802	A0A091G7S5	A0A091G8F3	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Trafficking protein particle complex subunit 6B.	0.717
N303_00993	N303_02323	A0A091G7S5	A0A091GCZ0	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Lebercilin.	0.608
N303_00993	N303_02936	A0A091G7S5	A0A091G6I5	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Trafficking protein particle complex subunit 8.	0.691
N303_00993	N303_03020	A0A091G7S5	A0A091GE58	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Trafficking protein particle complex subunit 5.	0.657
N303_00993	N303_05495	A0A091G7S5	A0A091FU25	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Trafficking protein particle complex subunit 2.	0.721
N303_00993	N303_05565	A0A091G7S5	A0A091GP82	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-19.	0.868
N303_00993	N303_05832	A0A091G7S5	A0A091FNV0	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	General vesicular transport factor p115.	0.457
N303_00993	N303_06007	A0A091G7S5	A0A091GFY8	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Trafficking protein particle complex subunit 3.	0.658
N303_00993	N303_10867	A0A091G7S5	A0A091GHQ5	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.727
N303_01802	N303_00993	A0A091G8F3	A0A091G7S5	Trafficking protein particle complex subunit 6B.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.717
N303_01802	N303_02323	A0A091G8F3	A0A091GCZ0	Trafficking protein particle complex subunit 6B.	Lebercilin.	0.972
N303_01802	N303_02936	A0A091G8F3	A0A091G6I5	Trafficking protein particle complex subunit 6B.	Trafficking protein particle complex subunit 8.	0.998
N303_01802	N303_03020	A0A091G8F3	A0A091GE58	Trafficking protein particle complex subunit 6B.	Trafficking protein particle complex subunit 5.	0.998
N303_01802	N303_05495	A0A091G8F3	A0A091FU25	Trafficking protein particle complex subunit 6B.	Trafficking protein particle complex subunit 2.	0.998
N303_01802	N303_05565	A0A091G8F3	A0A091GP82	Trafficking protein particle complex subunit 6B.	Ras-related protein Rab-19.	0.853
N303_01802	N303_05832	A0A091G8F3	A0A091FNV0	Trafficking protein particle complex subunit 6B.	General vesicular transport factor p115.	0.463
N303_01802	N303_06007	A0A091G8F3	A0A091GFY8	Trafficking protein particle complex subunit 6B.	Trafficking protein particle complex subunit 3.	0.999
N303_01802	N303_10867	A0A091G8F3	A0A091GHQ5	Trafficking protein particle complex subunit 6B.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.998
N303_02323	N303_00993	A0A091GCZ0	A0A091G7S5	Lebercilin.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.608
N303_02323	N303_01802	A0A091GCZ0	A0A091G8F3	Lebercilin.	Trafficking protein particle complex subunit 6B.	0.972