STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_08095Putative E3 ubiquitin-protein ligase DTX3. (241 aa)    
Predicted Functional Partners:
N303_12091
Putative E3 ubiquitin-protein ligase DTX2.
    
  0.832
N303_06196
Neurogenic locus notch protein 1.
    
 0.796
N303_06197
Neurogenic locus notch protein 1.
    
 0.796
N303_09328
E3 ubiquitin-protein ligase DTX1.
     
 0.776
N303_01123
E3 ubiquitin-protein ligase DTX4.
     
 0.776
N303_11545
Ubiquitin-40S ribosomal protein S27a.
    
  0.572
N303_04632
Protein eyes shut.
    
  0.556
N303_04635
Protein eyes shut.
    
  0.556
N303_04633
Protein eyes shut.
    
  0.556
N303_00195
VWFD domain-containing protein.
    
  0.556
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.