STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_11928Regulation of nuclear pre-mRNA domain-containing protein 1B. (274 aa)    
Predicted Functional Partners:
N303_00918
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.956
N303_11605
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2.
   
 0.937
N303_05296
Regulation of nuclear pre-mRNA domain-containing protein 1A.
  
 
0.922
N303_10347
DNA-directed RNA polymerase II subunit RPB3.
    
 0.875
N303_05747
DNA-directed RNA polymerase II subunit RPB9; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.871
N303_03160
DNA-directed RNA polymerase II subunit RPB4.
    
  0.863
N303_09899
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.837
N303_15270
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.836
N303_00201
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
  0.825
N303_05230
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
    
 0.807
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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