STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_00761CDK-activating kinase assembly factor MAT1. (278 aa)    
Predicted Functional Partners:
N303_10486
Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.
 
 
 0.999
N303_04822
Cyclin-H; Belongs to the cyclin family.
   
 0.999
N303_03647
TFIIH basal transcription factor complex helicase XPB subunit.
    
 0.998
N303_00152
General transcription factor IIH subunit 1.
    
 0.998
N303_08333
General transcription factor IIH subunit.
   
 0.998
N303_08726
General transcription factor IIH subunit 3.
    
 0.998
N303_14693
General transcription factor IIE subunit 2.
   
 0.998
N303_10347
DNA-directed RNA polymerase II subunit RPB3.
    
 0.987
N303_03160
DNA-directed RNA polymerase II subunit RPB4.
    
 0.987
N303_11622
Transcription initiation factor IIB.
    
 0.986
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.