STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_0362PFAM: helicase domain protein; type III restriction protein, res subunit; SMART: DEAD-like helicases-like. (443 aa)    
Predicted Functional Partners:
Lreu_0363
Amidophosphoribosyltransferase-like protein.
  
  
 0.943
Lreu_0553
PFAM: type II secretion system protein E; SMART: AAA ATPase.
   
  
 0.834
Lreu_0643
TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1.
   
  
 0.803
Lreu_0361
PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949.
     
 0.734
Lreu_0556
Hypothetical protein.
   
  
 0.724
hpf
SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.689
Lreu_0555
Competence protein ComGC-like protein.
 
  
 0.681
Lreu_0645
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein.
   
  
 0.656
Lreu_0554
PFAM: type II secretion system protein.
   
  
 0.646
Lreu_1242
Replicative DNA helicase loader DnaI; PFAM: Primosomal DnaI domain protein.
  
     0.572
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.