Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lreu_0733 | Lreu_0735 | Lreu_0733 | Lreu_0735 | PFAM: BioY protein. | PFAM: PhoH family protein. | 0.526 |
Lreu_0733 | Lreu_1453 | Lreu_0733 | Lreu_1453 | PFAM: BioY protein. | PFAM: cobalt transport protein. | 0.957 |
Lreu_0733 | Lreu_1663 | Lreu_0733 | Lreu_1663 | PFAM: BioY protein. | PFAM: cobalt transport protein. | 0.910 |
Lreu_0733 | Lreu_1706 | Lreu_0733 | Lreu_1706 | PFAM: BioY protein. | Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. | 0.600 |
Lreu_0733 | Lreu_1707 | Lreu_0733 | Lreu_1707 | PFAM: BioY protein. | TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein. | 0.532 |
Lreu_0733 | birA | Lreu_0733 | Lreu_0734 | PFAM: BioY protein. | biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.974 |
Lreu_0733 | ecfA | Lreu_0733 | Lreu_1454 | PFAM: BioY protein. | ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. | 0.935 |
Lreu_0733 | ecfA-2 | Lreu_0733 | Lreu_1455 | PFAM: BioY protein. | ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. | 0.927 |
Lreu_0733 | era | Lreu_0733 | Lreu_0738 | PFAM: BioY protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.533 |
Lreu_0733 | ybeY | Lreu_0733 | Lreu_0736 | PFAM: BioY protein. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.526 |
Lreu_0735 | Lreu_0733 | Lreu_0735 | Lreu_0733 | PFAM: PhoH family protein. | PFAM: BioY protein. | 0.526 |
Lreu_0735 | birA | Lreu_0735 | Lreu_0734 | PFAM: PhoH family protein. | biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.528 |
Lreu_0735 | era | Lreu_0735 | Lreu_0738 | PFAM: PhoH family protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.923 |
Lreu_0735 | ybeY | Lreu_0735 | Lreu_0736 | PFAM: PhoH family protein. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.989 |
Lreu_1453 | Lreu_0733 | Lreu_1453 | Lreu_0733 | PFAM: cobalt transport protein. | PFAM: BioY protein. | 0.957 |
Lreu_1453 | Lreu_1663 | Lreu_1453 | Lreu_1663 | PFAM: cobalt transport protein. | PFAM: cobalt transport protein. | 0.900 |
Lreu_1453 | Lreu_1706 | Lreu_1453 | Lreu_1706 | PFAM: cobalt transport protein. | Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. | 0.999 |
Lreu_1453 | birA | Lreu_1453 | Lreu_0734 | PFAM: cobalt transport protein. | biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.483 |
Lreu_1453 | ecfA | Lreu_1453 | Lreu_1454 | PFAM: cobalt transport protein. | ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. | 0.999 |
Lreu_1453 | ecfA-2 | Lreu_1453 | Lreu_1455 | PFAM: cobalt transport protein. | ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. | 0.999 |
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