STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_0840Hypothetical protein. (104 aa)    
Predicted Functional Partners:
Lreu_0841
Hypothetical protein.
  
    0.808
Lreu_0839
Hypothetical protein.
  
    0.806
Lreu_0842
Hypothetical protein.
  
    0.802
Lreu_0843
Hypothetical protein.
  
    0.802
Lreu_0838
Hypothetical protein.
  
    0.786
Lreu_0837
Hypothetical protein.
  
    0.756
Lreu_0844
Hypothetical protein.
  
    0.747
Lreu_0847
PFAM: protein of unknown function DUF1306.
  
    0.587
Lreu_0835
TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family.
  
    0.552
Lreu_0834
TIGRFAM: phage portal protein, SPP1 family; PFAM: phage portal protein, SPP1.
  
    0.516
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.