STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_0999PFAM: protein of unknown function DUF6, transmembrane. (296 aa)    
Predicted Functional Partners:
Lreu_0998
PFAM: phage integrase family protein.
 
     0.603
Lreu_1006
Hypothetical protein.
  
     0.601
Lreu_0898
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver.
  
   
 0.566
Lreu_1187
Hypothetical protein.
 
    0.524
Lreu_0997
PFAM: Patatin.
       0.487
Lreu_0884
PFAM: major facilitator superfamily MFS_1.
  
    0.480
Lreu_1000
PFAM: transposase, IS4 family protein.
       0.453
Lreu_0897
PFAM: helix-turn-helix domain protein.
  
    0.400
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.