STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_1114TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97. (391 aa)    
Predicted Functional Partners:
Lreu_1116
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein.
 
 
 0.971
Lreu_1115
PFAM: peptidase S14, ClpP; Belongs to the peptidase S14 family.
 
    0.967
Lreu_1109
PFAM: phage major tail protein.
 
     0.947
Lreu_1111
TIGRFAM: phage protein, HK97 gp10 family; PFAM: protein of unknown function DUF646, phage head/tail component.
 
     0.947
Lreu_1117
PFAM: phage Terminase.
 
     0.897
Lreu_0671
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein.
 
 
 0.875
Lreu_1107
TIGRFAM: phage tape measure protein; PFAM: Lytic transglycosylase, catalytic.
 
    0.872
Lreu_1120
TIGRFAM: phage terminase, small subunit, putative, P27 family; PFAM: phage terminase, small subunit, putative, P27.
 
     0.835
Lreu_1106
PFAM: protein of unknown function DUF1306.
 
    0.808
Lreu_1121
PFAM: HNH endonuclease; SMART: HNH nuclease.
 
    0.796
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.