STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_1314PFAM: Peptidoglycan-binding LysM. (253 aa)    
Predicted Functional Partners:
Lreu_1313
Hypothetical protein.
  
    0.588
Lreu_0848
PFAM: peptidase M23B.
  
  
 0.484
Lreu_0554
PFAM: type II secretion system protein.
  
 
   0.467
Lreu_0927
Hypothetical protein.
  
     0.443
Lreu_1552
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase.
   
  
 0.404
Lreu_0514
Rod shape-determining protein MreD.
  
     0.400
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.