STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_1401Response regulator receiver protein; PFAM: LytTr DNA-binding region. (144 aa)    
Predicted Functional Partners:
Lreu_1402
Hypothetical protein.
 
   
 0.957
Lreu_1420
Response regulator receiver protein; PFAM: LytTr DNA-binding region.
  
   
 0.654
Lreu_1419
Hypothetical protein.
 
  
 0.626
Lreu_1421
Hypothetical protein.
 
     0.601
Lreu_0903
Signal transduction histidine kinase, LytS; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region.
 
 
 0.596
Lreu_1400
PFAM: GCN5-related N-acetyltransferase.
       0.525
Lreu_1418
PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.486
Lreu_1399
Hypothetical protein.
       0.415
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.