STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_1432PFAM: helicase domain protein; type III restriction protein, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like. (1108 aa)    
Predicted Functional Partners:
Lreu_1433
PFAM: restriction modification system DNA specificity domain.
 
 
 0.974
Lreu_1436
PFAM: N-6 DNA methylase.
 
 
 0.956
Lreu_1435
PFAM: restriction modification system DNA specificity domain.
 
 
 0.950
Lreu_1434
PFAM: phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.751
Lreu_0869
PFAM: N-6 DNA methylase.
  
 
 0.655
Lreu_0870
PFAM: restriction modification system DNA specificity domain.
 
 
 0.564
Lreu_0871
PFAM: restriction modification system DNA specificity domain.
 
 
 0.532
Lreu_0873
PFAM: restriction modification system DNA specificity domain.
  
 
 0.470
Lreu_1431
PFAM: isochorismatase hydrolase.
       0.432
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.