STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_1590PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein. (296 aa)    
Predicted Functional Partners:
Lreu_1595
Transposase and inactivated derivatives-like protein.
 
     0.967
Lreu_0152
Transposase and inactivated derivatives-like protein.
 
     0.780
Lreu_1580
Hypothetical protein.
  
     0.529
Lreu_1835
Hypothetical protein.
  
     0.471
Lreu_1415
Hypothetical protein.
 
    0.453
Lreu_1356
Hypothetical protein.
  
     0.449
Lreu_1414
Hypothetical protein.
 
    0.441
Lreu_0476
Hypothetical protein.
  
     0.437
Lreu_0745
Hypothetical protein.
  
     0.437
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.