STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_1656PFAM: Integrase, catalytic region. (223 aa)    
Predicted Functional Partners:
Lreu_1655
Hypothetical protein.
 
    0.828
Lreu_1592
PFAM: Integrase, catalytic region.
 
    0.785
Lreu_0995
PFAM: Integrase, catalytic region.
 
     0.777
Lreu_1069
Hypothetical protein.
    0.732
Lreu_0442
Hypothetical protein.
    0.665
Lreu_1358
Hypothetical protein.
    0.665
Lreu_1343
PFAM: transposase IS3/IS911 family protein.
 
    0.477
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.