Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KZX17626.1Hypothetical protein. (144 aa)    
Predicted Functional Partners:
KZX17624.1
Hypothetical protein.
 
 
 0.998
KZX17625.1
RAMP superfamily protein.
 
 
 0.998
KZX17623.1
RAMP superfamily protein.
 
 
 0.997
KZX17627.1
Hypothetical protein.
 
 
 0.988
KZX16954.1
HD domain protein.
 
 
 0.949
KZX17622.1
CRISPR-associated protein.
 
     0.883
KZX17621.1
Hypothetical protein.
 
     0.795
KZX17628.1
Hypothetical protein.
       0.768
KZX09872.1
Protein SprT-like protein.
  
     0.461
KZX15390.1
Hypothetical protein.
  
     0.458
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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