STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rmlDdTDP-4-dehydrorhamnose reductase. (277 aa)    
Predicted Functional Partners:
rfbB_2
dTDP-glucose 4,6-dehydratase.
 
 
 0.997
rfbB_1
dTDP-glucose 4,6-dehydratase.
    
  0.936
KZX17106.1
UDP-glucose 4-epimerase.
  
 0.871
hddC
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
  
 
 0.857
galE
UDP-glucose 4-epimerase.
  
 0.782
tuaD
UDP-glucose 6-dehydrogenase TuaD.
  
 
 0.700
asnB
Asparagine synthetase B.
  
  
 0.666
wbpE
UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.535
dcd_1
Deoxycytidine triphosphate deaminase.
   
    0.531
dcd_2
Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.
   
    0.531
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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