STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yjmCPutative oxidoreductase YjmC. (343 aa)    
Predicted Functional Partners:
ilvB_3
Acetolactate synthase isozyme 1 large subunit.
    
 0.987
KZX12219.1
Hypothetical protein; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain.
    
 0.984
comB
Putative 2-phosphosulfolactate phosphatase.
     
 0.978
purM
Phosphoribosylformylglycinamidine cyclo-ligase.
       0.848
metC
Cystathionine beta-lyase.
 
   
 0.725
KZX16985.1
tRNA-splicing endonuclease subunit alpha.
       0.638
serA
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.563
ilvE
Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
  0.554
gapN
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.540
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
    
 0.529
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
Server load: low (18%) [HD]