STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hddCD-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase. (333 aa)    
Predicted Functional Partners:
rmd
GDP-6-deoxy-D-mannose reductase.
 
  
 0.925
pnp_3
Polyribonucleotide nucleotidyltransferase; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.
   
 0.918
selB
Selenocysteine-specific elongation factor; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily.
  
 0.912
KZX17106.1
UDP-glucose 4-epimerase.
  
 0.905
galE
UDP-glucose 4-epimerase.
  
 0.905
asnB
Asparagine synthetase B.
  
  
 0.902
rfbB_2
dTDP-glucose 4,6-dehydratase.
  
 
 0.888
rmlD
dTDP-4-dehydrorhamnose reductase.
  
 
 0.857
ypdF
Aminopeptidase YpdF; Belongs to the peptidase M24B family.
  
 
 0.851
KZX10640.1
DNA-binding transcriptional regulator IlvY.
  
  
 0.844
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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