Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ferFerredoxin. (381 aa)    
Predicted Functional Partners:
KZX17078.1
Ferredoxin.
 
   
0.941
KZX17068.1
Hypothetical protein.
  
    0.930
ttrB
Tetrathionate reductase subunit B precursor.
 
    
0.922
hycG_1
Formate hydrogenlyase subunit 7.
  
    0.804
hycE_1
Formate hydrogenlyase subunit 5 precursor; Belongs to the complex I 49 kDa subunit family.
  
    0.735
KZX17067.1
Hypothetical protein.
  
    0.722
ndhI_4
NAD(P)H-quinone oxidoreductase subunit I, chloroplastic.
  
  
  0.650
KZX17073.1
Hypothetical protein.
 
     0.626
KZX17098.1
Hydrogenase subunit F.
  
    0.573
KZX17100.1
Hypothetical protein.
  
    0.558
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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