STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cadAPutative cadmium-transporting ATPase. (693 aa)    
Predicted Functional Partners:
KZX16960.1
Hypothetical protein; Transcriptional repressor SmtB homolog.
 
  
 0.962
copA_2
Copper-exporting P-type ATPase A.
 
   
0.902
dfx
Desulfoferrodoxin.
  
    0.738
pdaD
Pyruvoyl-dependent arginine decarboxylase.
      
 0.629
KZX14110.1
Hydroxymethylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
      
 0.598
lrpC
HTH-type transcriptional regulator LrpC.
     
 0.595
KZX12062.1
Glutaredoxin.
   
 
 0.499
feoB
Ferrous iron transport protein B.
   
 
 0.483
pdhD
Dihydrolipoyl dehydrogenase.
     
 0.468
ecfA3
Energy-coupling factor transporter ATP-binding protein EcfA3; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
  
 0.459
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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