STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
czcDCobalt-zinc-cadmium resistance protein CzcD. (275 aa)    
Predicted Functional Partners:
pdhD
Dihydrolipoyl dehydrogenase.
   
  
 0.572
KZX14945.1
V-type ATP synthase subunit I; Belongs to the V-ATPase 116 kDa subunit family.
    
 
 0.572
hypA
Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
     
 0.517
cpdA_1
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
    
  0.479
yjjG
Pyrimidine 5'-nucleotidase YjjG.
    
  0.452
copA_2
Copper-exporting P-type ATPase A.
 
  
 0.445
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P).
    
 0.445
KZX10560.1
Putative cation efflux system proteinc.
  
 
 0.431
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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