KZX16954.1 protein (Methanobrevibacter filiformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KZX16954.1

HD domain protein. (335 aa)

Predicted Functional Partners:

KZX17627.1

0.970

KZX17625.1

0.954

KZX17624.1

0.952

KZX17623.1

0.950

KZX17626.1

0.949

cas4-cas1

0.629

KZX17622.1

0.592

Your Current Organism:

Methanobrevibacter filiformis

NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KZX16954.1	KZX17622.1	MBFIL_04510	MBFIL_00320	HD domain protein.	CRISPR-associated protein.	0.592
KZX16954.1	KZX17623.1	MBFIL_04510	MBFIL_00330	HD domain protein.	RAMP superfamily protein.	0.950
KZX16954.1	KZX17624.1	MBFIL_04510	MBFIL_00340	HD domain protein.	Hypothetical protein.	0.952
KZX16954.1	KZX17625.1	MBFIL_04510	MBFIL_00350	HD domain protein.	RAMP superfamily protein.	0.954
KZX16954.1	KZX17626.1	MBFIL_04510	MBFIL_00360	HD domain protein.	Hypothetical protein.	0.949
KZX16954.1	KZX17627.1	MBFIL_04510	MBFIL_00370	HD domain protein.	Hypothetical protein.	0.970
KZX16954.1	cas4-cas1	MBFIL_04510	MBFIL_18020	HD domain protein.	CRISPR-associated protein Cas4/endonuclease Cas1 fusion; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	0.629
KZX17622.1	KZX16954.1	MBFIL_00320	MBFIL_04510	CRISPR-associated protein.	HD domain protein.	0.592
KZX17622.1	KZX17623.1	MBFIL_00320	MBFIL_00330	CRISPR-associated protein.	RAMP superfamily protein.	0.934
KZX17622.1	KZX17624.1	MBFIL_00320	MBFIL_00340	CRISPR-associated protein.	Hypothetical protein.	0.932
KZX17622.1	KZX17625.1	MBFIL_00320	MBFIL_00350	CRISPR-associated protein.	RAMP superfamily protein.	0.930
KZX17622.1	KZX17626.1	MBFIL_00320	MBFIL_00360	CRISPR-associated protein.	Hypothetical protein.	0.883
KZX17622.1	KZX17627.1	MBFIL_00320	MBFIL_00370	CRISPR-associated protein.	Hypothetical protein.	0.893
KZX17622.1	cas4-cas1	MBFIL_00320	MBFIL_18020	CRISPR-associated protein.	CRISPR-associated protein Cas4/endonuclease Cas1 fusion; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	0.463
KZX17623.1	KZX16954.1	MBFIL_00330	MBFIL_04510	RAMP superfamily protein.	HD domain protein.	0.950
KZX17623.1	KZX17622.1	MBFIL_00330	MBFIL_00320	RAMP superfamily protein.	CRISPR-associated protein.	0.934
KZX17623.1	KZX17624.1	MBFIL_00330	MBFIL_00340	RAMP superfamily protein.	Hypothetical protein.	0.998
KZX17623.1	KZX17625.1	MBFIL_00330	MBFIL_00350	RAMP superfamily protein.	RAMP superfamily protein.	0.998
KZX17623.1	KZX17626.1	MBFIL_00330	MBFIL_00360	RAMP superfamily protein.	Hypothetical protein.	0.997
KZX17623.1	KZX17627.1	MBFIL_00330	MBFIL_00370	RAMP superfamily protein.	Hypothetical protein.	0.984