obg protein (Methanobrevibacter filiformis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

obg

GTPase Obg. (364 aa)

Predicted Functional Partners:

rpsI

0.868

rplM

0.868

cmk_1

0.863

rplJ

0.806

rplB

0.803

rpsC

0.796

rplO_1

0.783

rps6e

0.778

rps4e

0.760

rpl15e

0.754

Your Current Organism:

Methanobrevibacter filiformis

NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cmk_1	obg	MBFIL_05560	MBFIL_05570	Cytidylate kinase; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily.	GTPase Obg.	0.863
cmk_1	rplJ	MBFIL_05560	MBFIL_14680	Cytidylate kinase; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.443
obg	cmk_1	MBFIL_05570	MBFIL_05560	GTPase Obg.	Cytidylate kinase; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily.	0.863
obg	rpl15e	MBFIL_05570	MBFIL_10890	GTPase Obg.	50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	0.754
obg	rplB	MBFIL_05570	MBFIL_16360	GTPase Obg.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.803
obg	rplJ	MBFIL_05570	MBFIL_14680	GTPase Obg.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.806
obg	rplM	MBFIL_05570	MBFIL_14030	GTPase Obg.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.868
obg	rplO_1	MBFIL_05570	MBFIL_14040	GTPase Obg.	50S ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL18 family.	0.783
obg	rps4e	MBFIL_05570	MBFIL_16460	GTPase Obg.	30S ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.	0.760
obg	rps6e	MBFIL_05570	MBFIL_16760	GTPase Obg.	30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.	0.778
obg	rpsC	MBFIL_05570	MBFIL_16390	GTPase Obg.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.796
obg	rpsI	MBFIL_05570	MBFIL_14020	GTPase Obg.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.868
rpl15e	obg	MBFIL_10890	MBFIL_05570	50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	GTPase Obg.	0.754
rpl15e	rplB	MBFIL_10890	MBFIL_16360	50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.996
rpl15e	rplJ	MBFIL_10890	MBFIL_14680	50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.993
rpl15e	rplM	MBFIL_10890	MBFIL_14030	50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rpl15e	rplO_1	MBFIL_10890	MBFIL_14040	50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	50S ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL18 family.	0.997
rpl15e	rps4e	MBFIL_10890	MBFIL_16460	50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	30S ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.	0.997
rpl15e	rps6e	MBFIL_10890	MBFIL_16760	50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.	0.997
rpl15e	rpsC	MBFIL_10890	MBFIL_16390	50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.989