Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
ybhRInner membrane transport permease YbhR. (405 aa)    
Predicted Functional Partners:
drrA
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 0.992
KZX16052.1
Lineage-specific thermal regulator protein.
     
 0.799
KZX11766.1
YcaO-like family protein.
  
  
 0.703
afsK
Serine/threonine-protein kinase AfsK.
 
     0.698
kpsM
Polysialic acid transport protein KpsM.
    
  0.665
fbiB_1
Coenzyme F420:L-glutamate ligase.
  
  
 0.657
KZX10970.1
Nitroreductase A.
  
  
 0.657
nfrA2
FMN reductase.
  
  
 0.657
KZX14227.1
CAAX amino terminal protease self- immunity.
 
  
 0.635
KZX11950.1
ABC-2 family transporter protein.
  
 
  0.579
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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