Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
afsKSerine/threonine-protein kinase AfsK. (199 aa)    
Predicted Functional Partners:
ybhR
Inner membrane transport permease YbhR.
 
     0.698
cpdA_1
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
 
  
  0.573
KZX11993.1
Peptidase family M50.
  
  
 0.564
gapN
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.538
KZX17553.1
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase.
     
  0.517
hisS
histidine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
    0.503
rbsK
Ribokinase.
  
  
 0.489
drrA
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
     0.481
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
    0.457
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.457
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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