STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KZX16023.1Hypothetical protein. (158 aa)    
Predicted Functional Partners:
tbp
Transcription factor; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
 0.875
cobB_2
NAD-dependent protein deacetylase.
    
  0.777
glnA
Glutamine synthetase.
   
 
 0.727
KZX16289.1
Peptidase C39 family protein.
  
     0.642
hisG_1
ATP phosphoribosyltransferase.
 
     0.590
KZX16115.1
Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon.
 
  
  0.572
thyA
Thymidylate synthase.
 
 
  0.548
rpoH
DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.
  
 
  0.540
KZX14738.1
Archaeal ATPase.
 
     0.528
trxA
Thioredoxin.
  
 0.521
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.