Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KZX15650.1Pseudomurein-binding repeat protein. (583 aa)    
Predicted Functional Partners:
KZX15362.1
Zc3h12a-like ribonuclease NYN domain protein.
  
     0.592
KZX12026.1
Hypothetical protein.
  
     0.527
KZX17236.1
Sortase family protein.
  
     0.492
mobA_2
Molybdenum cofactor guanylyltransferase.
  
     0.485
KZX11175.1
Replication factor A.
 
     0.479
atpE
V-type proton ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.471
KZX15738.1
Succinylglutamate desuccinylase / aspartoacylase family protein.
 
     0.405
KZX12576.1
Transcriptional regulator PhoU.
  
     0.403
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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