Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KZX14227.1 | mnmC | MBFIL_09200 | MBFIL_06680 | CAAX amino terminal protease self- immunity. | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC. | 0.511 |
KZX17442.1 | aroC | MBFIL_01680 | MBFIL_10420 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.992 |
KZX17442.1 | asnB | MBFIL_01680 | MBFIL_00650 | Chorismate mutase. | Asparagine synthetase B. | 0.863 |
KZX17442.1 | hisC | MBFIL_01680 | MBFIL_08130 | Chorismate mutase. | Histidinol-phosphate aminotransferase. | 0.739 |
KZX17442.1 | mnmC | MBFIL_01680 | MBFIL_06680 | Chorismate mutase. | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC. | 0.502 |
aroC | KZX17442.1 | MBFIL_10420 | MBFIL_01680 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Chorismate mutase. | 0.992 |
aroC | asnB | MBFIL_10420 | MBFIL_00650 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Asparagine synthetase B. | 0.459 |
aroC | hisC | MBFIL_10420 | MBFIL_08130 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Histidinol-phosphate aminotransferase. | 0.845 |
aroC | mnmC | MBFIL_10420 | MBFIL_06680 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC. | 0.495 |
asnB | KZX17442.1 | MBFIL_00650 | MBFIL_01680 | Asparagine synthetase B. | Chorismate mutase. | 0.863 |
asnB | aroC | MBFIL_00650 | MBFIL_10420 | Asparagine synthetase B. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.459 |
asnB | glmS_2 | MBFIL_00650 | MBFIL_06690 | Asparagine synthetase B. | Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.985 |
asnB | hcp | MBFIL_00650 | MBFIL_08630 | Asparagine synthetase B. | Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.639 |
asnB | hisC | MBFIL_00650 | MBFIL_08130 | Asparagine synthetase B. | Histidinol-phosphate aminotransferase. | 0.825 |
asnB | mnmC | MBFIL_00650 | MBFIL_06680 | Asparagine synthetase B. | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC. | 0.694 |
asnB | mqnE | MBFIL_00650 | MBFIL_08290 | Asparagine synthetase B. | Aminodeoxyfutalosine synthase; Catalyzes the radical-mediated synthesis of 5-amino-5-(4- hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D- ribitylamino)uracil and L-tyrosine. | 0.566 |
glmS_2 | asnB | MBFIL_06690 | MBFIL_00650 | Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | Asparagine synthetase B. | 0.985 |
glmS_2 | mnmC | MBFIL_06690 | MBFIL_06680 | Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC. | 0.517 |
glmS_2 | murC_1 | MBFIL_06690 | MBFIL_02160 | Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | UDP-N-acetylmuramate--L-alanine ligase. | 0.438 |
hcp | asnB | MBFIL_08630 | MBFIL_00650 | Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | Asparagine synthetase B. | 0.639 |
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