Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KZX15376.1MarR family protein. (270 aa)    
Predicted Functional Partners:
KZX15375.1
DHHA1 domain protein.
 
     0.893
srp19
Signal recognition particle protein Srp19; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
 
     0.857
KZX15373.1
uroporphyrinogen-III synthase.
       0.788
KZX10996.1
Hypothetical protein; Putative metallophosphoesterase MG207 homolog.
       0.671
KZX13523.1
DHH family protein.
  
     0.668
KZX17550.1
Hypothetical protein.
 
     0.666
KZX17578.1
Threonine dehydratase.
  
     0.641
rhlE
ATP-dependent RNA helicase RhlE.
 
     0.617
pyrE_1
Orotate phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
     0.611
KZX10342.1
Ribonuclease R winged-helix domain protein.
  
     0.599
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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