STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kanEalpha-D-kanosaminyltransferase. (365 aa)    
Predicted Functional Partners:
cbiD
cobalt-precorrin-6A synthase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
       0.842
hel308
Ski2-like helicase; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.
       0.668
mgs
Alpha-monoglucosyldiacylglycerol synthase.
 
     0.581
rmlA
Glucose-1-phosphate thymidylyltransferase.
 
 0.557
wzxC
Lipopolysaccharide biosynthesis protein WzxC.
 
 
 0.556
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
 
 0.547
moaC2
Cyclic pyranopterin monophosphate synthase accessory protein 2.
     
 0.523
ytgP_1
Putative cell division protein YtgP.
 
 
 0.520
ytgP_2
Putative cell division protein YtgP.
 
 
 0.518
gpgS
Glucosyl-3-phosphoglycerate synthase.
 
 0.493
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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