STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ndhI_4NAD(P)H-quinone oxidoreductase subunit I, chloroplastic. (160 aa)    
Predicted Functional Partners:
ndhA
NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic.
 
 0.998
KZX14001.1
Putative monovalent cation/H+ antiporter subunit B.
 
 
 0.996
KZX14003.1
Ferredoxin-2.
 
  
 0.996
mrpD
Na(+)/H(+) antiporter subunit D.
 
 0.991
hycG_2
Formate hydrogenlyase subunit 7.
 
 
 0.982
KZX13999.1
Hypothetical protein.
  
    0.975
KZX14000.1
Putative monovalent cation/H+ antiporter subunit B.
  
 
 0.974
frdA
Fumarate reductase flavoprotein subunit.
  
 0.968
mnhC1
Na(+)/H(+) antiporter subunit C1.
 
 0.957
nuoH
NADH-quinone oxidoreductase subunit H.
 
 0.940
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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