Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
korA_22-oxoglutarate oxidoreductase subunit KorA. (390 aa)    
Predicted Functional Partners:
korB_2
2-oxoglutarate oxidoreductase subunit KorB.
 
 0.999
KZX13482.1
2-oxoglutarate-acceptor oxidoreductase subunit OorD.
 
 
 0.998
korB_1
2-oxoglutarate oxidoreductase subunit KorB.
 
 0.994
padE_1
NADH-dependent phenylglyoxylate dehydrogenase subunit gamma.
 
 0.981
pdhD
Dihydrolipoyl dehydrogenase.
    
 0.942
ilvE
Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.941
porB
Pyruvate synthase subunit PorB.
  
 0.935
ndhI_2
NAD(P)H-quinone oxidoreductase subunit I, chloroplastic.
 
 
 0.910
korA_1
2-oxoglutarate oxidoreductase subunit KorA.
    
  0.884
KZX12029.1
Indolepyruvate oxidoreductase subunit beta.
 
 0.834
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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