STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
korB_22-oxoglutarate oxidoreductase subunit KorB. (477 aa)    
Predicted Functional Partners:
korA_2
2-oxoglutarate oxidoreductase subunit KorA.
 
 0.999
KZX13482.1
2-oxoglutarate-acceptor oxidoreductase subunit OorD.
 
 
 0.996
korA_1
2-oxoglutarate oxidoreductase subunit KorA.
 
 0.983
pdhD
Dihydrolipoyl dehydrogenase.
    
 0.942
ilvE
Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
    
 0.940
porB
Pyruvate synthase subunit PorB.
  
 0.900
korB_1
2-oxoglutarate oxidoreductase subunit KorB.
 
0.890
porA
Pyruvate synthase subunit PorA.
  
 0.819
ansA
L-asparaginase 1; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.
       0.816
padE_2
NADH-dependent phenylglyoxylate dehydrogenase subunit gamma.
  
 0.779
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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