Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KZX13501.1Bacterial membrane flanked domain protein. (423 aa)    
Predicted Functional Partners:
KZX13499.1
THUMP domain protein.
 
     0.866
kmo
Kynurenine 3-monooxygenase.
 
  
 0.850
KZX13497.1
Kinase binding protein CGI-121.
 
     0.655
leuA_1
2-isopropylmalate synthase; Catalyzes the condensation of pyruvate and acetyl-coenzyme A to form (R)-citramalate; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.602
KZX15402.1
Pseudomurein-binding repeat protein.
 
     0.491
KZX15362.1
Zc3h12a-like ribonuclease NYN domain protein.
  
     0.465
murC_1
UDP-N-acetylmuramate--L-alanine ligase.
 
     0.424
KZX10640.1
DNA-binding transcriptional regulator IlvY.
  
  
 0.402
Your Current Organism:
Methanobrevibacter filiformis
NCBI taxonomy Id: 55758
Other names: DSM 11501, M. filiformis, strain RFM-3
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